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సియస్ఐఆర్ - కణ మరియు అణు జీవవిజ్ఞాన కేంద్రం

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దివ్య తేజ్ సౌపతి

దివ్య తేజ్ సౌపతి

దివ్య తేజ్ సౌపతి

శాస్త్రవేత్త
బయోఇన్ఫర్మేటిక్స్, బిగ్ డేటా, జీవశాస్త్రంలో అల్గోరిథంలు
2862
tej@ccmb.res.in 

పరిశోధన ఆసక్తులు
కణాలలో ఉండే DNA, సమిష్టిగా జీనోమ్ అని పిలుస్తారు, ఇది సెల్యులార్ యంత్రాలు జీవించడానికి మరియు పనిచేయడానికి చదివే సూచనల మాన్యువల్. 
భారతీయుల జన్యువులలోని వైవిధ్యం వారిని ఆరోగ్యం మరియు వ్యాధులలో అసమానతలకు ఎలా దారితీస్తుందో అర్థం చేసుకోవడంలో నా ప్రయోగశాల ఆసక్తి కలిగి ఉంది. 
మేము దీనిని రెండు స్థాయిలలో అధ్యయనం చేస్తాము.

మొదట, మేము అత్యాధునిక అధిక నిర్గమాంశ శ్రేణి సాంకేతికతలను ఉపయోగించి వ్యక్తుల జెనెటిక వేరియేషన్లను గుర్తిస్తాము. పెద్ద దేశవ్యాప్తంగా జనాభా జెనోమిక్స్ ప్రోగ్రాముల భాగంగా, మేము ఆరోగ్యమైన జెనోమ్స్‌లో సహజ వేరియేషన్లను మ్యాప్ చేస్తాము. ముఖ్యంగా, మా ఆసక్తులు రెండు వర్గాల వేరియేషన్లలో ఉంటాయి, అవి స్ట్రక్చరల్ వేరియేషన్లు మరియు టాండమ్ రిపీట్స్ గా అవుతాయి.

మేము అదే డిఎన్ఏ సీక్వెన్స్ ఎలా వేరు వేరు ఫినోటైప్‌లను సృష్టించగలదు అన్నదీ అధ్యయనం చేస్తున్నాము, ఇది ఒకే జీవి యొక్క వివిధ కణ రకాల్లో గమనించబడింది. ఒకే జెనోమ్ ఉన్నప్పటికీ, కణాలు ఎపిజెనెటిక్ పద్ధతుల ద్వారా భిన్నంగా నియంత్రించబడవచ్చు, ఇవి కణ స్పెసిఫిక్ జన్యు వ్యక్తీకరణ నమూనాలను ఫలితంగా తీసుకువస్తాయి. సింగిల్ సెల్ జెనోమిక్ సాంకేతికతలను ఉపయోగించి, వివిధ కణాల జన్యు వ్యక్తీకరణ మరియు ఎపిజెనెటిక్ ప్రొఫైల్స్‌ను విశ్లేషించి కణ విభిన్నతను అర్థం చేసుకుంటాము.

చివరగా, సంక్లిష్ట జీవ వైజ్ఞానిక డేటాను వేగంగా మరియు మెరుగ్గా విశ్లేషించడానికి, అలాగే మరింత పరస్పర మరియు సహజమైన డేటా విజువలైజేషన్‌ కోసం మేము కొత్త కంప్యూటేషనల్ పద్ధతులను అభివృద్ధి చేస్తున్నాము.

ఎంచుకున్న ప్రచురణలు (Selected Publications)

Pathak A.K., Mishra G.P., Uppili B., Walia S., Fatihi S., Abbas T., Banu S., Ghosh A., Kanampalliwar A., Jha A., Fatma S., Aggarwal S., Dhar M.S., Marwal R., Radhakrishnan V.S., Ponnusamy K., Kabra S., Rakshit P., Bhoyar R.C., Jain A., Divakar M.K., Imran M., Faruq M., Sowpati D.T., Thukral L., Raghav S.K., Mukerji M.
SARS-CoV-2 జీనోమ్స్‌లో హోస్ట్ లోపలి వైవిధ్యాల స్థల-కాల గమనికలు.
Nucleic Acids Research, 2022 ఫిబ్రవరి 22; 50(3):1551–1561.
doi: 10.1093/nar/gkab1297

Kumar V.J., Banu S., Sasikala M., Parsa K.V.L., Sowpati D.T., Yadav R., Tallapaka K.B., Siva A.B., Vishnubhotla R., Rao G.V., Reddy D.N.
SARS-CoV-2 యొక్క B.1.617.2 (డెల్టా) వేరియంట్‌పై REGEN-COV యాంటీబాడీ కాక్‌టెయిల్ ప్రభావశీలత: ఒక కోహోర్ట్ అధ్యయనం.
Journal of Internal Medicine, 2022 మార్చి; 291(3):380–383.
doi: 10.1111/joim.13408

Singh N.K., Srivastava S., Zaveri L., Bingi T.C., Mesipogu R., Kumar V.S., Gaur N., Hajirnis N., Machha P., Shambhavi S., Khan S., Soujanya M., Nagabandi T., Mishra R.K., Tallapaka K.B., Sowpati D.T.†
COVID-19 రోగుల్లో SARS-CoV-2 ఇన్ఫెక్షన్‌కు హోస్ట్ ట్రాన్స్‌క్రిప్షనల్ ప్రతిస్పందన.
Clinical and Translational Medicine, 2021 సెప్టెంబర్; 11(9):e534.
doi: 10.1002/ctm2.534

Kulkarni O., Narreddy S., Zaveri L., Kalal I.G., Tallapaka K.B., Sowpati D.T.†
స్పైక్ ప్రోటీన్‌లో మార్పులు లేకుండా SARS-CoV-2 రీ-ఇన్ఫెక్షన్‌కు ఆధారాలు.
Clinical Infectious Diseases, 2021 ఫిబ్రవరి 16: ciab136.
doi: 10.1093/cid/ciab136

Banu S., Jolly B., Mukherjee P., Singh P., Khan S., Zaveri L., Shambhavi S., Gaur N., Reddy S., Kaveri K., Srinivasan S., Gopal D.R., Siva A.B., Thangaraj K., Tallapaka K.B., Mishra R.K., Scaria V., Sowpati D.T.†
భారతదేశంలోని SARS-CoV-2 ఐసోలేట్ల ప్రత్యేక ఫైలోజెనెటిక్ క్లస్టర్.
Open Forum Infectious Diseases, 2020 సెప్టెంబర్ 18; 7(11):ofaa434.
doi: 10.1093/ofid/ofaa434

Saha P., Sowpati D.T., Soujanya M., Srivastava I., Mishra R.K.
పెరిసెంట్రోమెరిక్ జీనోమ్ నిర్మాణం మరియు క్రోమాటిన్ ల్యాండ్‌స్కేప్ పరస్పర చర్యలు Drosophila melanogaster లోని హెటెరోక్రొమాటిక్ జీన్ల వ్యక్తీకరణను నియంత్రిస్తాయి.
Epigenetics & Chromatin, 2020 అక్టోబర్ 7; 13(1):41.
doi: 10.1186/s13072-020-00358-4

Avvaru A.K., Sharma D., Verma A., Mishra R.K., Sowpati D.T.
MSDB: మైక్రోశాటెలైట్‌లకు సంబంధించిన సమగ్రంగా వ్యాఖ్యానించిన డేటాబేస్.
Nucleic Acids Research, 2020 జనవరి 8; 48(D1):D155–D159.
doi: 10.1093/nar/gkz886

విద్య మరియు అనుభవం

P.G:

జంతుశాస్త్రం; శ్రీ వెంకటేశ్వర విశ్వవిద్యాలయం, తిరుపతి; 2002

Ph.D:

హైదరాబాద్ విశ్వవిద్యాలయం/సెంటర్ ఫర్ DNA ఫింగర్ ప్రింటింగ్ అండ్ డయాగ్నస్టిక్స్, హైదరాబాద్; బయోకెమిస్ట్రీ; 2012

Post.Doc:

రీసెర్చ్ అసోసియేట్; ఇండియన్ ఇన్స్టిట్యూట్ ఆఫ్ టెక్నాలజీ, ఢిల్లీ; 2012 – 2013

రీసెర్చ్ అసోసియేట్, CSIR-CCMB ; 2013 – 2014 ;

ప్రాజెక్ట్ సైంటిస్ట్; CSIR-CCMB; 2014 – 2019

టీమ్ సభ్యులు

team-members-pic
Divya Tej Sowpati
Divya Tej Sowpati

Scientist-D

Scientist-D

Nitesh Kumar Singh
Nitesh Kumar Singh

Senior Technical Officer II

Senior Technical Officer II

Pratheusa Machha
Pratheusa Machha

Senior Research Fellow

Senior Research Fellow

Onkar Kulkarni
Onkar Kulkarni

Junior Research Fellow

Junior Research Fellow

Nuthalapati Poojitha
Nuthalapati Poojitha

Junior Research Fellow

Junior Research Fellow

Arvind Kumar
Arvind Kumar

Junior Research Fellow

Junior Research Fellow

Sofia Banu
Sofia Banu

Junior Research Fellow

Junior Research Fellow

Anukrati Sharma
Anukrati Sharma

Junior Research Fellow

Junior Research Fellow

Payel Mukherjee
Payel Mukherjee

Research Assistant

Research Assistant

Victor Bannerjee
Victor Bannerjee

Project Associate

Project Associate

Malini Nemalikanti
Malini Nemalikanti

Project Associate

Project Associate

Priya Singh
Priya Singh

Project Associate - I

Project Associate - I

Reuben Jacob Mathew
Reuben Jacob Mathew

Project Associate

Project Associate

Sreelekshmi M S
Sreelekshmi M S

Project Associate

Project Associate

Kottapalli Srividya
Kottapalli Srividya

Project Associate

Project Associate

ప్రకాశనాలు

శీర్షిక

పత్రిక

సంవత్సరం

Neutral and adaptive genetic variation in Indian snow leopards, Panthera uncia
Current Science
2023
Kleptoparasitic interaction between Snow Leopard Panthera uncia and Red Fox Vulpes vulpes suggested by circumstantial evidence in Pin Valley National Park, India
Journal Of Threatened Taxa
2022
Genetic status of wild buffaloes of India
Back from the brink\\\"- recovering the wild buffalo (Bubalis arnee) population in central India. Conservation Action Series No. 20210716. Eds. V. Menon, R. Kaul, N. V. K. Ashraf and R. Chaudhary
2021
Ancient mtDNA from the extinct Indian cheetah supports unexpectedly deep divergence from African cheetahs
Scientific Reports DOI: 10.1038/s41598-020-60751-7
2020
Conservation status of Asiatic Wild Buffalo (Bubalus arnee) in Chhattisgarh revealed through genetic study
A report
2019
De novo assembly and annotation of Asiatic lion (Panthera leo persica) genome
BioRxiv doi.org/10.1101/549790
2019
Characteristics of the complete mitochondrial genome of the monotypic genus Arctictis (Family: Viverridae) and its phylogenetic implications
PeerJ: https://doi.org/10.7717/peerj.8033
2019
How healthy the Indian leopards are?
Atlas of Science: http//atlasofscience.org
2018
The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration
Mitochondrial DNA Part B: DOI: 10.1080/23802359.2018.1443853
2018
Characterization of the complete mitogenome of Indian Mouse Deer, Moschiola indica (Artiodactyla: Tragulidae) and its evolutionary significance
Scientific Reports: DOI:10.1038/s41598-018-20946-5
2018
DNA Techniques in Wildlife Forensics (Animals): Standard Operating Procedures (SOP)
A SOP
2017
Range-wide snow leopard phylogeography supports three subspecies.
Journal of Heredity: DOI: https://doi.org/10.1093/jhered/esx044.
2017
Characterization of Major Histocompatibility Complex Class I and Class II DRB Loci of Captive and Wild Indian Leopards (Panthera pardus fusca).
Genetica: DOI: 10.1007/s10709-017-9979-5.
2017
The complete mitochondrial genome of Eld`s deer (Rucervus eldii eldii) and its phylogenetic implications
Gene Reports: DOI: dx.doi.org/10.1016/j.genrep.2017.10.001.
2017
DNA tools to establish species and individual identity of confiscated biological samples in wildlife related crime: A case report
Journal of Forensic, Legal and Investigative Sciences 2: 006
2016
Complete mitochondrial genome sequence of Asiatic lion (Panthera leo persica).
Mitochondrial DNA: DOI: 10.1080/23802359.2016.1214541.
2016
Complete mitochondrial genome sequence of Indian clouded leopard (Neofelis nebulosa).
Mitochondrial DNA: DOI: 10.1080/23802359.2016.1214543.
2016
Detection of 40 bp insertion?deletion (INDEL) in mitochondrial control region among sambar (Rusa unicolor) populations in India
BMC Research Notes, 8:581-587
2015
Pre-Historic and recent vicariance events shape genetic structure and diversity in endangered Lion-tailed macaque in the western ghats: Implications for conservation
PLoS ONE 10(11): e0142597
2015
DNA-based identification of a snake in a wine bottle using universal primers: A case of mistaken identity
Forensic Science International, 214: e51-3
2012
Species identification from dried snake venom confiscated from a hotel in Kerala: a case report.
Journal of Forensic Sciences, 57: 826-8
2012
Cross-species amplification of human microsatellite in Pig-tailed and Stump-tailed macaques
Journal of Genetics, 90: e6-e9
2011
Phylogenetic studies in Indian scleractinian corals based on mitochondrial cytochrome b gene sequences
Current Science, 101: 669-76
2011
DNA based Wildlife Forensics: Clues in the strands
Biotech News, 5: 186 - 191
2010
Modern approaches to the wildlife conservation
In: You deserve we conserve. IK Intl. Publishing House, New Delhi
2007
The origin of Indian Star tortoises (Geochelone elegans) based on nuclear and mitochondrial DNA analysis: a story of rescue and repatriation
Conservation Genetics, 7: 231-240
2005
Twenty polymorphic microsatellite markers in the Asiatic lion (Panthera leo persica)
Conservation Genetics, 7:1005-1008
2005
A novel microsatellite (STR) marker for forensic identification of big cats
Forensic Science International, 141: 123-127
2004
Conservation of wild animals by assisted reproduction and Molecular marker technology- a review
Indian Journal of Experimental Biology, 41: 710 - 723
2003
Development and characterization of ten novel microsatellite markers from Chital deer (Cervus axis) and their cross-amplification in other related species
Molecular Ecology Notes, 3: 607 - 609
2003
Phylogeography and conservation genetics of Eld\\\'s Deer (Cervus eldi)
Molecular Ecology, 12: 1-10
2003
Development and characterization of novel microsatellite markers in Asiatic lion (Panthera leo persica)
Molecular Ecology Notes, 2: 542 - 543
2002
Role of tissue culture in crop improvement. In Proceedings: Recent Advances in Biosciences for Sustainable Food Security
In Proceedings: Recent Advances in Biosciences for Sustainable Food Security pp. 53 - 57.
1999
Agrobacterium-mediated transformation in Indian Mustard (Brassica juncea L. Coss and Czern).
Cruciferae Newsletter, 19: 59-60.
1997
High frequency plant regeneration from seedling explants of Brassica juncea (L.) Coss & Czern.
Cruciferae Newsletter, 18: 28-29.
1996
The unique N-terminal region of Mycobacterium tuberculosis Sigma Factor A (σA) plays a dominant role in the essential function of this protein
J Biol Chem
2023
A cross-sectional study on the nasopharyngeal microbiota of individuals with SARS-CoV-2 infection across three COVID-19 waves in India
Front Microbiol
2023
Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes
Nucleic Acids Res
2022
SARS-CoV-2 seroprevalence in the city of Hyderabad, India in early 2021
IJID Reg.
2022
Transmission of B.1.617.2 Delta variant between vaccinated healthcare workers.
Sci Rep
2022
Clinical outcomes in individuals hospitalized with SARS-CoV-2 Delta variant (B.1.617.2) who had been vaccinated with Covishield (ChAdOx1) and Covaxin (BBV-152)
IJID Reg
2022
Tissue- specific transcriptome recovery on withdrawal from chronic alcohol exposure in zebrafish.
Alcohol. 2021 Mar;91:29-38. doi: 10.1016/j.alcohol.2020.10.001. Epub 2020 Oct 8. PMID: 33038458.
2021
C3G Regulates STAT3, ERK, Adhesion Signaling, and Is Essential for Differentiation of Embryonic Stem Cells.
Stem Cell Rev Rep. 2021 Aug;17(4):1465-1477. doi: 10.1007/s12015-021-10136-8. Epub 2021 Feb 23. PMID: 33624208; PMCID: P
2021
SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants.
J Biosci. 2021;46(1):22. doi: 10.1007/s12038-021-00145-7. PMID: 33737495; PMCID: PMC7895735.
2021
SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion.
Nature. 2021 Sep 6. doi: 10.1038/s41586-021-03944-y. Epub ahead of print. PMID: 34488225.
2021
Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection Without Mutations in the Spike Protein.
Clin Infect Dis. 2021 Sep 7;73(5):e1239-e1241. doi: 10.1093/cid/ciab136. PMID: 34492695; PMCID: PMC7929054.
2021
Host transcriptional response to SARS-CoV-2 infection in COVID-19 patients.
Clin Transl Med. 2021 Sep;11(9):e534. doi: 10.1002/ctm2.534. PMID: 34586723; PMCID: PMC8453261.
2021
Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India.
Science. 2021 Oct 14:eabj9932. doi: 10.1126/science.abj9932. Epub ahead of print. PMID: 34648303.
2021
Effectiveness of REGEN-COV antibody cocktail against the B.1.617.2 (delta) variant of SARS-CoV-2: A cohort study.
J Intern Med. 2021 Nov 1. doi: 10.1111/joim.13408. Epub ahead of print. PMID: 34719811.
2021
Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes.
Epigenetics Chromatin. 2020 Oct 7;13(1):41. doi: 10.1186/s13072-020-00358-4. PMID: 33028366; PMCID: PMC7541242.
2020
Transcriptomic dataset of zebrafish tissues following chronic alcohol exposure and withdrawal.
Data Brief. 2020 Oct 21;33:106442. doi: 10.1016/j.dib.2020.106442. PMID: 33163595; PMCID: PMC7607250.
2020
A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates.
Open Forum Infect Dis. 2020 Sep 18;7(11):ofaa434. doi: 10.1093/ofid/ofaa434. PMID: 33200080; PMCID: PMC7543508.
2020
Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid.
G3 (Bethesda). 2020 May 4;10(5):1485-1494. doi: 10.1534/g3.120.401151. PMID: 32217632
2020
MSDB: a comprehensive, annotated database of microsatellites.
Nucleic Acids Res. 2020 Jan 8;48(D1):D155-D159. doi: 10.1093/nar/gkz886. PMID: 31599331
2020
Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes.
Genomics. 2019 Mar;111(2):177-185. doi:10.1016/j.ygeno.2018.02.001. Epub 2018 Feb 10. PMID: 29432976.
2019
The putative Neuronatin imprint control region is an enhancer that also regulates the Blcap gene.
Epigenomics. 2019 Feb;11(3):251-266. doi: 10.2217/epi-2018-0060. Epub 2019 Jan 23. PMID: 30672333.
2019
Patterns of microsatellite distribution across eukaryotic genomes.
BMC Genomics. 2019 Feb 22;20(1):153. doi: 10.1186/s12864-019-5516-5. PMID: 30795733;
2019
PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
Bioinformatics. 2018 Mar 15;34(6):943-948. doi: 10.1093/bioinformatics/btx721. PMID: 29121165.
2018
MSDB: A Comprehensive Database of Simple Sequence Repeats.
Genome Biol Evol. 2017 Jun 1;9(6):1797-1802. doi: 10.1093/gbe/evx132. PMID: 28854643;
2017
C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search.
BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi:10.1186/s12859-017-1786-6. PMID: 28929968
2017
Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.
Sci Rep. 2016 Apr 26;6:25006. doi: 10.1038/srep25006. PMID: 27112593
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Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.
PLoS One. 2016 Nov 28;11(11):e0166854. doi: 10.1371/journal.pone.0166854. PMID: 27893794
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Human mesenchymal stem cells: New sojourn of bacterial pathogens.
Int J Med Microbiol. 2015 May;305(3):322-6. doi: 10.1016/j.ijmm.2015.01.001. Epub 2015 Jan 13. PMID: 25648374.
2015
Expansion of the polycomb system and evolution of complexity.
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2015
Gene cooption in mycobacteria and search for virulence attributes: comparative proteomic analyses of Mycobacterium tuberculosis, Mycobacterium indicus pranii and other mycobacteria.
Int J Med Microbiol. 2014 Jul;304(5-6):742-8. doi: 10.1016/j.ijmm.2014.05.006. Epub 2014 May 29. PMID: 24951307.
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A ChIP- on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes.
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An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.
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SARS-CoV-2 Variant Delta Potently Suppresses Innate Immune Response and Evades Interferon-Activated Antiviral Responses in Human Colon Epithelial Cells.
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2008
An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.
Mech Dev. 2008 Nov-Dec;125(11-12):963-73. doi: 10.1016/j.mod.2008.08.002. Epub 2008 Aug 28. PMID: 18789387.
2008
A ChIP- on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes.
Genom Data. 2014 May 10;2:78-81. doi: 10.1016/j.gdata.2014.05.001. PMID: 26484075
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A ChIP- on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes.
Genom Data. 2014 May 10;2:78-81. doi: 10.1016/j.gdata.2014.05.001. PMID: 26484075
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Gene cooption in mycobacteria and search for virulence attributes: comparative proteomic analyses of Mycobacterium tuberculosis, Mycobacterium indicus pranii and other mycobacteria.
Int J Med Microbiol. 2014 Jul;304(5-6):742-8. doi: 10.1016/j.ijmm.2014.05.006. Epub 2014 May 29. PMID: 24951307.
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Gene cooption in mycobacteria and search for virulence attributes: comparative proteomic analyses of Mycobacterium tuberculosis, Mycobacterium indicus pranii and other mycobacteria.
Int J Med Microbiol. 2014 Jul;304(5-6):742-8. doi: 10.1016/j.ijmm.2014.05.006. Epub 2014 May 29. PMID: 24951307.
2014
Expansion of the polycomb system and evolution of complexity.
Mech Dev. 2015 Nov;138 Pt 2:97-112. doi: 10.1016/j.mod.2015.07.013. Epub 2015 Aug 7. PMID: 26259680.
2015
Expansion of the polycomb system and evolution of complexity.
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2015
Human mesenchymal stem cells: New sojourn of bacterial pathogens.
Int J Med Microbiol. 2015 May;305(3):322-6. doi: 10.1016/j.ijmm.2015.01.001. Epub 2015 Jan 13. PMID: 25648374.
2015
Human mesenchymal stem cells: New sojourn of bacterial pathogens.
Int J Med Microbiol. 2015 May;305(3):322-6. doi: 10.1016/j.ijmm.2015.01.001. Epub 2015 Jan 13. PMID: 25648374.
2015
Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.
PLoS One. 2016 Nov 28;11(11):e0166854. doi: 10.1371/journal.pone.0166854. PMID: 27893794
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Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.
PLoS One. 2016 Nov 28;11(11):e0166854. doi: 10.1371/journal.pone.0166854. PMID: 27893794
2016
Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.
Sci Rep. 2016 Apr 26;6:25006. doi: 10.1038/srep25006. PMID: 27112593
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Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.
Sci Rep. 2016 Apr 26;6:25006. doi: 10.1038/srep25006. PMID: 27112593
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C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search.
BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi:10.1186/s12859-017-1786-6. PMID: 28929968
2017
C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search.
BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi:10.1186/s12859-017-1786-6. PMID: 28929968
2017
MSDB: A Comprehensive Database of Simple Sequence Repeats.
Genome Biol Evol. 2017 Jun 1;9(6):1797-1802. doi: 10.1093/gbe/evx132. PMID: 28854643;
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MSDB: A Comprehensive Database of Simple Sequence Repeats.
Genome Biol Evol. 2017 Jun 1;9(6):1797-1802. doi: 10.1093/gbe/evx132. PMID: 28854643;
2017
PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
Bioinformatics. 2018 Mar 15;34(6):943-948. doi: 10.1093/bioinformatics/btx721. PMID: 29121165.
2018
PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
Bioinformatics. 2018 Mar 15;34(6):943-948. doi: 10.1093/bioinformatics/btx721. PMID: 29121165.
2018
Patterns of microsatellite distribution across eukaryotic genomes.
BMC Genomics. 2019 Feb 22;20(1):153. doi: 10.1186/s12864-019-5516-5. PMID: 30795733;
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Patterns of microsatellite distribution across eukaryotic genomes.
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The putative Neuronatin imprint control region is an enhancer that also regulates the Blcap gene.
Epigenomics. 2019 Feb;11(3):251-266. doi: 10.2217/epi-2018-0060. Epub 2019 Jan 23. PMID: 30672333.
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The putative Neuronatin imprint control region is an enhancer that also regulates the Blcap gene.
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Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes.
Genomics. 2019 Mar;111(2):177-185. doi:10.1016/j.ygeno.2018.02.001. Epub 2018 Feb 10. PMID: 29432976.
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Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes.
Genomics. 2019 Mar;111(2):177-185. doi:10.1016/j.ygeno.2018.02.001. Epub 2018 Feb 10. PMID: 29432976.
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MSDB: a comprehensive, annotated database of microsatellites.
Nucleic Acids Res. 2020 Jan 8;48(D1):D155-D159. doi: 10.1093/nar/gkz886. PMID: 31599331
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MSDB: a comprehensive, annotated database of microsatellites.
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2020
Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid.
G3 (Bethesda). 2020 May 4;10(5):1485-1494. doi: 10.1534/g3.120.401151. PMID: 32217632
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Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid.
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A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates.
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A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates.
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Transcriptomic dataset of zebrafish tissues following chronic alcohol exposure and withdrawal.
Data Brief. 2020 Oct 21;33:106442. doi: 10.1016/j.dib.2020.106442. PMID: 33163595; PMCID: PMC7607250.
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Transcriptomic dataset of zebrafish tissues following chronic alcohol exposure and withdrawal.
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Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes.
Epigenetics Chromatin. 2020 Oct 7;13(1):41. doi: 10.1186/s13072-020-00358-4. PMID: 33028366; PMCID: PMC7541242.
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Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes.
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2020
Effectiveness of REGEN-COV antibody cocktail against the B.1.617.2 (delta) variant of SARS-CoV-2: A cohort study.
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Effectiveness of REGEN-COV antibody cocktail against the B.1.617.2 (delta) variant of SARS-CoV-2: A cohort study.
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Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India.
Science. 2021 Oct 14:eabj9932. doi: 10.1126/science.abj9932. Epub ahead of print. PMID: 34648303.
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Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India.
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Host transcriptional response to SARS-CoV-2 infection in COVID-19 patients.
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Host transcriptional response to SARS-CoV-2 infection in COVID-19 patients.
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Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection Without Mutations in the Spike Protein.
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Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection Without Mutations in the Spike Protein.
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SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion.
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SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion.
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SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants.
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SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants.
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C3G Regulates STAT3, ERK, Adhesion Signaling, and Is Essential for Differentiation of Embryonic Stem Cells.
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C3G Regulates STAT3, ERK, Adhesion Signaling, and Is Essential for Differentiation of Embryonic Stem Cells.
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Tissue- specific transcriptome recovery on withdrawal from chronic alcohol exposure in zebrafish.
Alcohol. 2021 Mar;91:29-38. doi: 10.1016/j.alcohol.2020.10.001. Epub 2020 Oct 8. PMID: 33038458.
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Tissue- specific transcriptome recovery on withdrawal from chronic alcohol exposure in zebrafish.
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Clinical outcomes in individuals hospitalized with SARS-CoV-2 Delta variant (B.1.617.2) who had been vaccinated with Covishield (ChAdOx1) and Covaxin (BBV-152)
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Clinical outcomes in individuals hospitalized with SARS-CoV-2 Delta variant (B.1.617.2) who had been vaccinated with Covishield (ChAdOx1) and Covaxin (BBV-152)
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Transmission of B.1.617.2 Delta variant between vaccinated healthcare workers.
Sci Rep
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Transmission of B.1.617.2 Delta variant between vaccinated healthcare workers.
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SARS-CoV-2 seroprevalence in the city of Hyderabad, India in early 2021
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SARS-CoV-2 seroprevalence in the city of Hyderabad, India in early 2021
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Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes
Nucleic Acids Res
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Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes
Nucleic Acids Res
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A cross-sectional study on the nasopharyngeal microbiota of individuals with SARS-CoV-2 infection across three COVID-19 waves in India
Front Microbiol
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A cross-sectional study on the nasopharyngeal microbiota of individuals with SARS-CoV-2 infection across three COVID-19 waves in India
Front Microbiol
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The unique N-terminal region of Mycobacterium tuberculosis Sigma Factor A (σA) plays a dominant role in the essential function of this protein
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The unique N-terminal region of Mycobacterium tuberculosis Sigma Factor A (σA) plays a dominant role in the essential function of this protein
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Development and characterization of novel microsatellite markers in Asiatic lion (Panthera leo persica)
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Phylogeography and conservation genetics of Eld\\\\\\\'s Deer (Cervus eldi)
Molecular Ecology, 12: 1-10
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Phylogeography and conservation genetics of Eld\\\\\\\'s Deer (Cervus eldi)
Molecular Ecology, 12: 1-10
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Development and characterization of ten novel microsatellite markers from Chital deer (Cervus axis) and their cross-amplification in other related species
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2003
Development and characterization of ten novel microsatellite markers from Chital deer (Cervus axis) and their cross-amplification in other related species
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Conservation of wild animals by assisted reproduction and Molecular marker technology- a review
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Conservation of wild animals by assisted reproduction and Molecular marker technology- a review
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A novel microsatellite (STR) marker for forensic identification of big cats
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A novel microsatellite (STR) marker for forensic identification of big cats
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Twenty polymorphic microsatellite markers in the Asiatic lion (Panthera leo persica)
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Twenty polymorphic microsatellite markers in the Asiatic lion (Panthera leo persica)
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The origin of Indian Star tortoises (Geochelone elegans) based on nuclear and mitochondrial DNA analysis: a story of rescue and repatriation
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The origin of Indian Star tortoises (Geochelone elegans) based on nuclear and mitochondrial DNA analysis: a story of rescue and repatriation
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Phylogenetic studies in Indian scleractinian corals based on mitochondrial cytochrome b gene sequences
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Phylogenetic studies in Indian scleractinian corals based on mitochondrial cytochrome b gene sequences
Current Science, 101: 669-76
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Cross-species amplification of human microsatellite in Pig-tailed and Stump-tailed macaques
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Cross-species amplification of human microsatellite in Pig-tailed and Stump-tailed macaques
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Species identification from dried snake venom confiscated from a hotel in Kerala: a case report.
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DNA-based identification of a snake in a wine bottle using universal primers: A case of mistaken identity
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Pre-Historic and recent vicariance events shape genetic structure and diversity in endangered Lion-tailed macaque in the western ghats: Implications for conservation
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Detection of 40 bp insertion?deletion (INDEL) in mitochondrial control region among sambar (Rusa unicolor) populations in India
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Detection of 40 bp insertion?deletion (INDEL) in mitochondrial control region among sambar (Rusa unicolor) populations in India
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Complete mitochondrial genome sequence of Indian clouded leopard (Neofelis nebulosa).
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Complete mitochondrial genome sequence of Indian clouded leopard (Neofelis nebulosa).
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Complete mitochondrial genome sequence of Asiatic lion (Panthera leo persica).
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Complete mitochondrial genome sequence of Asiatic lion (Panthera leo persica).
Mitochondrial DNA: DOI: 10.1080/23802359.2016.1214541.
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DNA tools to establish species and individual identity of confiscated biological samples in wildlife related crime: A case report
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DNA tools to establish species and individual identity of confiscated biological samples in wildlife related crime: A case report
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The complete mitochondrial genome of Eld`s deer (Rucervus eldii eldii) and its phylogenetic implications
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The complete mitochondrial genome of Eld`s deer (Rucervus eldii eldii) and its phylogenetic implications
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Characterization of Major Histocompatibility Complex Class I and Class II DRB Loci of Captive and Wild Indian Leopards (Panthera pardus fusca).
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Range-wide snow leopard phylogeography supports three subspecies.
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A SOP
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Characterization of the complete mitogenome of Indian Mouse Deer, Moschiola indica (Artiodactyla: Tragulidae) and its evolutionary significance
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Characterization of the complete mitogenome of Indian Mouse Deer, Moschiola indica (Artiodactyla: Tragulidae) and its evolutionary significance
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The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration
Mitochondrial DNA Part B: DOI: 10.1080/23802359.2018.1443853
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The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration
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How healthy the Indian leopards are?
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Characteristics of the complete mitochondrial genome of the monotypic genus Arctictis (Family: Viverridae) and its phylogenetic implications
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De novo assembly and annotation of Asiatic lion (Panthera leo persica) genome
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De novo assembly and annotation of Asiatic lion (Panthera leo persica) genome
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Conservation status of Asiatic Wild Buffalo (Bubalus arnee) in Chhattisgarh revealed through genetic study
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Conservation status of Asiatic Wild Buffalo (Bubalus arnee) in Chhattisgarh revealed through genetic study
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Ancient mtDNA from the extinct Indian cheetah supports unexpectedly deep divergence from African cheetahs
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Ancient mtDNA from the extinct Indian cheetah supports unexpectedly deep divergence from African cheetahs
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Genetic status of wild buffaloes of India
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Kleptoparasitic interaction between Snow Leopard Panthera uncia and Red Fox Vulpes vulpes suggested by circumstantial evidence in Pin Valley National Park, India
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Kleptoparasitic interaction between Snow Leopard Panthera uncia and Red Fox Vulpes vulpes suggested by circumstantial evidence in Pin Valley National Park, India
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Neutral and adaptive genetic variation in Indian snow leopards, Panthera uncia
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Neutral and adaptive genetic variation in Indian snow leopards, Panthera uncia
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2023

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