CCMB

CSIR - Centre for Cellular & Molecular Biology

The Innovation Engine of India

Sriram Varahan

Sriram Varahan

Sriram Varahan

Scientist-D
Cellular Metabolism, Microbial Genetics and Microbial Pathogenesis
2531
sriram[at]ccmb[dot]res[dot]in

Research Interests:

Fluctuations in nutrient availability is one of the most common challenges faced by microbes in their natural environment and within the host environment upon infection. In response to this challenge, microbes reversibly transition to specialized cell states that allow them to survive and persist in these dynamic environments. Our group aims to understand how conserved metabolic events orchestrate these cell state transitions specifically in the context of microbial community development and host pathogenesis. We will employ simple fungal models like Baker\\\\\\\’s yeast as well as pathogenic fungal models (primarily Cryptococcus neoformans) and use multidisciplinary approaches combining microbial genetics, biochemical and cell-biology based approaches in conjunction with microscopy, transcriptomics, pertinent mass-spectrometry and cell culture/animal infection models to address these questions.


Selected Publications

Sriram Varahan* and Sunil Laxman*. (2021). Bend or break: how biochemically versatile molecules enable metabolic division of labor in clonal microbial communities. GENETICS Oct 2;219(2):iyab109. doi: 10.1093/genetics/iyab109. (* Co-corresponding authors)

Sriram Varahan, Vaibhhav Sinha, Adhish Walvekar, Sandeep Krishna and Sunil Laxman. (2020). Resource-plasticity driven carbon-nitrogen resource budgeting enables specialization and division of labour in a clonal community. eLife Sep 2;9:e57609. doi: 10.7554/eLife.57609.

Sriram Varahan, Adhish Walvekar, Vaibhhav Sinha, Sandeep Krishna and Sunil Laxman. (2019). Metabolic constraints drive self-organization of specialized cell groups. eLife Jun 26;8:e46735. doi: 10.7554/eLife.46735.

Sriram Varahan, Nathan Harms, John Tomich, Michael Gilmore and Lynn Hancock. (2014). An ABC transporter is required for secretion of peptide sex pheromones in Enterococcus faecalis. mBio. 5(5):e01726-14. doi:10.1128/mBio.01726-14.

Sriram Varahan, Vijayalakshmi Iyer, William Moore and Lynn Hancock. (2013). Eep confers lysozyme resistance to Enterococcus faecalis via the activation of the ECF sigma factor, SigV. Journal of Bacteriology. Jul;195(14):3125-34. doi:10.1128/JB.00291-13.

Education & Experience

P.G:

B-Tech. Biotechnology ; Anna University ; 2010

Ph.D:

Role of Enterococcal Membrane Proteins in Cell-Cell Communication and Stress Adaptation ; University of Kansas, USA ; 2014

Post.Doc:

Institute for Stem Cell Science and Regenerative Medicine (InStem), Bengaluru, India ; 2015-2021 ;

Team Members

team-members-pic
Sriram Varahan
Sriram Varahan

Scientist-D

Scientist-D

T Avinash Raj
T Avinash Raj

Senior Technical Officer(2)

Senior Technical Officer(2)

Purushotham V
Purushotham V

Sr. Technical Officer(1)

Sr. Technical Officer(1)

Shamanthula Santhosh Kumar
Shamanthula Santhosh Kumar

Technician (1)

Technician (1)

Yogita Martoliya
Yogita Martoliya

Post-Doctoral Fellow

Post-Doctoral Fellow

Dhrumi Miteshkumar Shah
Dhrumi Miteshkumar Shah

Senior Research Fellow (UGC)

Senior Research Fellow (UGC)

Pallavi Phatak
Pallavi Phatak

Junior Research Fellow

Junior Research Fellow

Siddhi Gupta
Siddhi Gupta

Junior Research Fellow

Junior Research Fellow

Kumari Uma Mahto
Kumari Uma Mahto

Research Associate-I (DBT)

Research Associate-I (DBT)

Sudharsan M
Sudharsan M

Research Associate-I (DBT)

Research Associate-I (DBT)

Nikita Rewatkar
Nikita Rewatkar

Project Associate-I

Project Associate-I

Ishvarya Suresh
Ishvarya Suresh

Project Associate -I

Project Associate -I

Sayantani Biswas
Sayantani Biswas

Project Associate-I

Project Associate-I

Sooraj Vasanthan
Sooraj Vasanthan

Project Associate-I

Project Associate-I

Mary Shejo
Mary Shejo

Project Associate-I

Project Associate-I

Publications

Title

Journal

Year

Unity in Diversity: Interkingdom Polymicrobial Biofilms in Disease
Multispecies Biofilms: Technologically Advanced Methods to Study Microbial Communities
2023
Bend or break: how biochemically versatile molecules enable metabolic division of labor in clonal microbial communities
Genetics. 219(2):iyab109. doi: 10.1093/genetics/iyab109.
2021
SigV mediates lysozyme resistance in Enterococcus faecalis via RsiV and PgdA
Journal of Bacteriology. 203(20):e0025821. doi: 10.1128/JB.00258-21.
2021
Influence of the alternate sigma factor RpoN on global gene expression and carbon catabolism in Enterococcus faecalis V583
mBio. 12(3):e00380-21. doi: 10.1128/mBio.00380-21.
2021
Resource plasticity driven carbon-nitrogen budgeting enables specialization and division of labor in a clonal community
Elife. Sep 2;9:e57609. doi: 10.7554/eLife.57609.
2020
Involvement of chromosomally encoded homologs of the RRNPP protein family in Enterococcus faecalis biofilm formation and UTI pathogenesis
Journal of Bacteriology. Aug 10;202(17):e00063-20. doi: 10.1128/JB.00063-20.
2020
Large-scale testing using Tapestry pooling
medRxiv. doi: https://doi.org/10.1101/2020.10.09.20209742.
2020
Tapestry: A Single-Round Smart Pooling Technique for COVID-19 Testing
medRxiv. doi:https://doi.org/10. 1101/ 2020.04.23.20077727.
2020
Metabolic constraints drive self-organization of specialized cell groups
Elife. Jun 26;8. pii: e46735. doi: 10.7554/eLife.46735.
2019
To defend or not to defend: That?s the question
mSphere. 1(3):e00127-16. doi:10.1128/mSphere.00127-16.
2016
Pheromone killing of multidrug resistant Enterococcus faecalis strain V583 by commensal strains
Proc Natl Acad Sci U S A. Jun 9;112(23):7273-8.
2015
An ABC transporter is required for secretion of peptide sex pheromones in Enterococcus faecalis
mBio. 5(5):e01726-14. doi:10.1128/mBio.01726-14.
2014
Drosophila host model reveals new Enterococcus faecalis quorum-sensing associated virulence factors
PLoS ONE. May;8(5):e64740.doi:10.1371/journal.pone.0064740.
2013
Eep confers lysozyme resistance to Enterococcus faecalis via the activation of the ECF sigma factor, SigV
Journal of Bacteriology. Jul;195(14):3125-34. doi:10.1128/JB.00291-13.
2013
The deubiquitinase Ubp3/Usp10 constrains glucose-mediated mitochondrial repression via phosphate budgeting
Elife. Sep 26:12:RP90293. doi: 10.7554/eLife.90293.
2024
Enterococcus faecalis
Trends in Microbiology. 32(9):925-926. doi: 10.1016/j.tim.2024.04.010.
2024
Humoral Innate Immune Response and Disease
Clinical Immunology. Aug;144(2):142-58. doi: 10.1016/j.clim.2012.06.002.
2012
Humoral Innate Immune Response and Disease
Clinical Immunology. Aug;144(2):142-58. doi: 10.1016/j.clim.2012.06.002.
2012
Humoral Innate Immune Response and Disease
Clinical Immunology. Aug;144(2):142-58. doi: 10.1016/j.clim.2012.06.002.
2012
Enterococcus faecalis
Trends in Microbiology. 32(9):925-926. doi: 10.1016/j.tim.2024.04.010.
2024
Enterococcus faecalis
Trends in Microbiology. 32(9):925-926. doi: 10.1016/j.tim.2024.04.010.
2024
The deubiquitinase Ubp3/Usp10 constrains glucose-mediated mitochondrial repression via phosphate budgeting
Elife. Sep 26:12:RP90293. doi: 10.7554/eLife.90293.
2024
The deubiquitinase Ubp3/Usp10 constrains glucose-mediated mitochondrial repression via phosphate budgeting
Elife. Sep 26:12:RP90293. doi: 10.7554/eLife.90293.
2024

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